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127 news items

UniProt release 15.10 - November 3, 2009

What are UniProt 'Complete proteome' sets? How to retrieve them? · Change to cross-reference to OMA

Statistics for UniProtKB: Swiss-Prot · TrEMBL

UniProt release 15.9 - October 13, 2009

Trichophyton tonsurans: an uninvited guest at the World Judo Championships · Cross-references to Genevestigator

UniProt release 15.8 - September 22, 2009

300'000 HAMAP cross-references in UniProtKB/Swiss-Prot

UniProt release 15.7 - September 1, 2009

Formyl peptide receptors: the missing link between olfaction and immune system · Cross-references to STRING

UniProt release 15.6 - July 28, 2009

Microsporidian polar tube: a molecular syringe in UniProtKB/Swiss-Prot · Cross-references to CTD and Ensembl

UniProt release 15.5 - July 7, 2009

New insights into drug development with Polyketide synthases · Cross-references to UCSC

UniProt release 15.4 - June 16, 2009

Dioxygenases: from antigenic variation to myeloid malignacies

UniProt release 15.3 - May 26, 2009

Rotavirus: a serial killer in UniProtKB/Swiss-Prot · Cross-references to PMAP-CutDB

UniProt release 15.2 - May 5, 2009

Fission yeast: the third eukaryotic complete proteome in UniProtKB/Swiss-Prot · Cross-references to OMA

UniProt release 15.1 - April 14, 2009

Hepatitis Delta virus, a living fossil virus of the old RNA world? · Cross-references to CAZy

UniProt release 15.0 - March 24, 2009

Major release

UniProt release 14.9 - March 3, 2009

Hush, Little Fly · Cross-references to TCDB and Pathway_Interaction_DB

UniProt release 14.8 - February 10, 2009

The UniProtKB/Swiss-Prot bronze medal is awarded to the plant Arabidopsis thaliana · Cross-references to Plant ontology, IPI and Bgee

UniProt release 14.7 - January 20, 2009

UniPathway, a metabolic door to UniProtKB/Swiss-Prot · New document on pathway controlled vocabulary · Syntax modification of the 'Pathway' subsection

UniProt release 14.6 - December 16, 2008

GeneCards: yet another means to get human gene chromosomal location · Cross-references to GeneCards and PRIDE

UniProt release 14.5 - November 25, 2008

Plastid: the most important organelle!

UniProt release 14.4 - November 4, 2008

One thousand legs and a few toxins · Cross-references to NextBio and Xenbase

UniProt release 14.3 - October 14, 2008

10th anniversary of the Swiss Institute of Bioinformatics

UniProt release 14.2 - September 23, 2008

Additional bibliography information in UniProtKB

UniProt release 14.1 - September 2, 2008

First draft of the complete human proteome available in UniProtKB/Swiss-Prot

UniProt release 14.0 - July 22, 2008

Major release · New official UniProt website · New structure for DE lines · Cross-reference to BindingDB ·UniProt decoy databases

UniProt release 13.6 - July 1, 2008

Transient pleasures of the mind · Cross-references to AGRICOLA

UniProt release 13.5 - June 10, 2008

Over 100 cross-references in UniProtKB/Swiss-Prot · Cross-references to HOGENOM and HOVERGEN

UniProt release 13.4 - May 20, 2008

Swiss-Prot in the Wonderland of protein names · Cross-references to CGD

UniProt release 13.3 - April 29, 2008

6 million entries in UniProtKB · Cross-references to NMPDR

UniProt release 13.2 - April 8, 2008

Dictyostelium discoideum on the move · New document listing all secondary accession numbers · Removal of cross-references to HIV and TRANSFAC

UniProt release 13.1 - March 18, 2008

A small but deadly pathogen: Hepatitis B virus · Cross-references to ProMEX

UniProt release 13.0 - February 26, 2008

Major release · Representation of non-standard amino acids · Cross-references to PhosphoSite and 2DBase-Ecoli

UniProt release 12.8 - February 5, 2008

Over 20,000 fungal proteins manually annotated in UniProtKB/Swiss-Prot · Cross-references to World-2DPAGE, Cornea-2DPAGE, DOSAC-COBS-2DPAGE, HSC-2DPAGE, REPRODUCTION-2DPAGE, and SWISS-2DPAGE · New document on human and mouse protein kinases

UniProt release 12.7 - January 15, 2008

More than 40'000 new microbial entries derived from automated annotation · Cross-references to dictyBase, PDBsum and VectorBase · New documents for several prokaryotic complete proteomes · Changes in subcellular location controlled vocabulary · Clustered sequences in UniMES

UniProt release 12.6 - December 4, 2007

Complete proteome for Arabidopsis thaliana in UniProtKB

UniProt release 12.5 - November 13, 2007

Acanthamoeba polyphaga mimivirus, a "giant" virus in UniProtKB/Swiss-Prot · Changes to ptmlist.txt document file · Changes to cross-references to PDB · Cross-references to CleanEx

UniProt release 12.4 - October 23, 2007

More controlled vocabulary in the 'Subcellular location' subsection · New document on subcellular location · Change of EC number format

UniProt release 12.3 - October 2, 2007

Oryza sativa (rice) species separated into japonica and indica subspecies in UniProtKB/Swiss-Prot entries · Cross-references to RefSeq and GeneID

UniProt release 12.2 - September 11, 2007

Yeast PDR5: the first adopted protein in UniProtKB/Swiss-Prot

UniProt release 12.1 - August 21, 2007

Over 18'500 phosphorylation sites identified by mass spectrometry

UniProt release 12.0 - July 24, 2007

Major release · Protein existence · Change in UniProtKB release frequency ·

UniProt release 11.3 - July 10, 2007

Knottins or how to knit in the protein world

UniProt release 11.2 - June 26, 2007

Obesity in the spotlight

UniProt release 11.1 - June 12, 2007

4,000 bovine entries · Cross-references to PeptideAtlas and DisProt

UniProt release 11.0 - May 29, 2007

Major release · UniMES · Sequence caution · Change in Subcellular location · Cross-references to PseudoCAP and Orphanet

UniProt release 10.5 - May 15, 2007

Links to wikipedia

UniProt release 10.4 - May 1, 2007

T rex and us

UniProt release 10.3 - April 17, 2007

Complete set of Arabidopsis thaliana F-box proteins

UniProt release 10.2 - April 3, 2007

Spider dermonecrotic toxin family · Cross-references to BuruList

UniProt release 10.1 - March 20, 2007

New retrovirus in Koala genome

UniProt release 10.0 - March 6, 2007

Major release · Change in document on cross-references

UniProt release 9.7 - February 20, 2007

Complete human kinome · Cross-references to CYGD and Viral_cRNA in EMBL

UniProt release 9.6 - February 6, 2007

One million comment lines · Cross-references to Cornea-2DPAGE, DOSAC-COBS-2DPAGE, REPRODUCTION-2DPAGE

UniProt release 9.5 - January 23, 2007

Reintroduction of the initiator methionine

UniProt release 9.4 - January 9, 2007

Complete yeast proteome · Cross-references to MaizeGDB

UniProt release 9.3 - December 12, 2006

Dengue virus · Protein Spotlight document · Cross-references to DIP, Reactome and GermOnline

UniProt release 9.2 - November 28, 2006

Human G protein-coupled receptor proteins · Cross-references to Gene3D

UniProt release 9.1 - November 14, 2006

CD antigens · UniProtKB accession number · Cross-references to DrugBank, euHCVdb and dbSNP

UniProt release 9.0 - October 31, 2006

Major release · FASTA header line · ID line · Cross-references to Human Protein Atlas and Gene Ontology (GO)

UniProt release 8.9 - October 17, 2006

Human polymorphisms

UniProt release 8.8 - October 3, 2006

Over 1,000 rice proteins annotated

UniProt release 8.7 - September 19, 2006

The search for the origin of HIV-1 · Cross-references to KEGG

UniProt release 8.6 - September 5, 2006

3D-structure information for over 10,000 proteins · Cross-references to ArrayExpress and PeroxiBase

UniProt release 8.5 - August 22, 2006

10,000 species in UniProtKB/Swiss-Prot

UniProt release 8.4 - July 25, 2006

Happy anniversary, Swiss-Prot! · Large scale analyses

UniProt release 8.3 - July 11, 2006

10'000 Human-Mouse orthologous pairs

UniProt release 8.2 - June 27, 2006

Titin · Oryza sativa (rice) entries

UniProt release 8.1 - June 13, 2006

Protein naming guidelines · Cross-references to RZPD-ProtExp

UniProt release 8.0 - May 30, 2006

Major release · VARSPLIC -> VARSEQ · DATABASE -> WEB RESOURCE ·Viral host data

UniProt release 7.7 - May 16, 2006

Tox-Prot · Nomenclature of scorpion potassium channel toxins

UniProt release 7.6 - May 2, 2006

5,000 rat entries · Sequences with over 10,000 amino acids

UniProt release 7.5 - April 18, 2006

The ComX pheromone · Controlled vocabulary for tissues

UniProt release 7.4 - April 4, 2006

Complete proteome for Drosophila melanogaster · Cross-references to UniGene

UniProt release 7.3 - March 21, 2006

Chikungunya virus annotation

UniProt release 7.2 - March 7, 2006

The most frequently updated entry · Cross-references to GenomeReviews

UniProt release 7.1 - February 21, 2006

25'000 protein polymorphisms · UniSave

UniProt release 7.0 - February 7, 2006

Major release · Dates and versions · Copyright · Cross-References to PptaseDB and BioCyc

UniProt release 6.9 - January 24, 2006

Mammalian, Xenopus and Zebrafish Gene Collections · Cross-references to MIM

UniProt release 6.8 - January 10, 2006

H5N1 pathogenicity · Change in document on cross-references

UniProt release 6.7 - December 20, 2005

"De-merge" of multi-species

UniProt release 6.6 - December 6, 2005

200'000 entries in UniProtKB/Swiss-Prot

UniProt release 6.5 - November 22, 2005

Keyword hierarchies and categories

UniProt release 6.4 - November 8, 2005

A city-sized crowd of authors · Cross-references to LinkHub

UniProt release 6.3 - October 25, 2005

Over 100'000 prokaryotic entries

UniProt release 6.2 - October 11, 2005

Albumin: the most popular entry · Improvement in the DR EMBL line · Cross-references to Maize-2DPAGE

UniProt release 6.1 - September 27, 2005

10'000 mouse entries · Feature key METAL modified

UniProt release 6.0 - September 13, 2005

Major release · Changes in the OG line · Cross-references to TAIR · New FTIds (PRO)

UniProt release 5.8 - August 30, 2005

Escherichia coli inner membrane proteome

UniProt release 5.7 - August 16, 2005

Data from an enzyme genomics project

UniProt release 5.6 - August 2, 2005

SARS news

UniProt release 5.5 - July 19, 2005

Orangutan, the most represented non-human primate · Obsolete file uniprot_trembl_varsplic.fasta.gz · Cross-references to Genew

UniProt release 5.4 - July 5, 2005

Official wording for UniProtKB · Format change in the cross-reference document · Topic COFACTOR

UniProt release 5.3 - June 21, 2005

Hydrogenosomal genome encoded proteins · New line: Hydrogenosome

UniProt release 5.2 - June 7, 2005

Uncleaved N-terminal translocation signals

UniProt release 5.1 - May 24, 2005

More than 10 cross-references per entry

UniProt release 5.0 - May 10, 2005

Major release · Format change in the cross-reference and feature lines · Cross-references to PANTHER

UniProt release 4.6 - April 26, 2005

1 million cysteine residues · New document on pathway · Cross-references: MGD -> MGI

UniProt release 4.5 - April 12, 2005

Cross-references to SMR

UniProt release 4.4 - March 29, 2005

Keyword 'Complete proteome' in fungal entries · New document on variant

UniProt release 4.3 - March 15, 2005
UniProt release 4.2 - March 1, 2005

More than 10'000 additional splice variants

UniProt release 4.1 - February 15, 2005

Changes of entry names ·Cross-references to GeneDB_Spombe and LegioList

UniProt release 4.0 - February 1, 2005

Major release · Changes in the ftp site · Change in UniProtKB ID · New topic INTERACTION · New document similar.txt

UniProt release 3.5 - January 4, 2005

Extension of the Swiss-Prot entry name format · Cross-references to Ensembl

UniProt release 3.4 - December 21, 2004

TRPA1 and TRPM8: receptors involved in sensing cold · Changes in the Reference line · New topic BIOPHYSICOCHEMICAL PROPERTIES

UniProt release 3.3 - December 7, 2004
UniProt release 3.2 - November 23, 2004

Major update of C.elegans entries · File Submit.txt removed

UniProt release 3.1 - November 9, 2004

Conversion to mixed-case

UniProt release 3.0 - October 25, 2004

Major release · Release note document

UniProt release 2.7 - October 11, 2004

Cross-references to H-InvDB and WormBase

UniProt release 2.6 - September 27, 2004
UniProt release 2.5 - September 13, 2004

Controlled vocabulary for PTMs

UniProt release 2.4 - August 31, 2004

1'500 cited journals · TrEMBL release notes

UniProt release 2.3 - August 16, 2004

New Reference (RL) line · Cross-references to PDB

UniProt release 2.2 - July 30, 2004

PTM controlled vocabularies

UniProt release 2.1 - July 19, 2004

HERV proteins· KW order · Topic MASS SPECTROMETRY · Cross-references to AGD

UniProt release 2.0 - July 5, 2004

Major release · TrEMBLnew disappears · New format for the gene (GN) line · Cross-references to IntAct and Reactome

UniProt release 1.12 - June 21, 2004

Noah's ark or biodiversity · Digital Object Identifier · New Reference (RG) line · Cross-references to EchoBASE

UniProt release 1.11 - June 7, 2004

Fungi and Swiss-Prot · Keyword Direct protein sequencing

UniProt release 1.10 - May 24, 2004

New topic TOXIC DOSE

UniProt release 1.9 - May 4, 2004

150'000 entries

UniProt release 1.8 - April 26, 2004

Two completely annotated microbial proteomes · Cross-references to Gene Farm

UniProt release 1.7 - April 13, 2004

Extinct organisms · Cross-references to OGP, 2-DE database of rat heart

UniProt release 1.6 - March 29, 2004

Major release · User manual in HTML

UniProt release 1.5 - March 15, 2004

Cross-references to RGD

UniProt release 1.4 - March 1, 2004

More than 500'000 comment blocks

UniProt release 1.3 - February 16, 2004

UniProt release 1.2 - February 2, 2004

SPIN: new tool for sequence submission

UniProt release 1.1 - January 16, 2004

10,000 different citations for JBC · Documents on species, deleted entries and EMBL

UniProt release 1.0 - December 15, 2003

First release of UniProt

Old Swiss-Prot releases

February 28, 2003 to November 28, 2003

Release notes for major Swiss-Prot and TrEMBL releases

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